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LOC109753795 hydroxyproline O-galactosyltransferase GALT2 [ Aegilops tauschii ]

Gene ID: 109753795, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109753795
Gene description
hydroxyproline O-galactosyltransferase GALT2
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109753795 in Genome Data Viewer
Location:
chromosome: 5D
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 5D NC_053039.2 (48164426..48168163, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 5D NC_053039.1 (48309460..48313292, complement)

Chromosome 5D - NC_053039.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120963830 Neighboring gene probable mediator of RNA polymerase II transcription subunit 19b Neighboring gene vegetative cell wall protein gp1-like Neighboring gene 60S ribosomal protein L36-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053039.2 Reference Aet v5.0 Primary Assembly

    Range
    48164426..48168163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020312725.3 → XP_020168314.1  hydroxyproline O-galactosyltransferase GALT2

    UniProtKB/TrEMBL
    A0A453JM65
    Conserved Domains (1) summary
    PLN03133
    Location:122 → 662
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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