U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109752971 GPI mannosyltransferase 2 [ Aegilops tauschii ]

Gene ID: 109752971, updated on 11-Jan-2024

Summary

Go to the top of the page Help
Gene symbol
LOC109752971
Gene description
GPI mannosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC109752971 in Genome Data Viewer
Location:
chromosome: 2D
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 2D NC_053036.2 (563516162..563521604)
101 previous assembly Aet v4.0 (GCF_002575655.1) 2D NC_053036.1 (564621390..564626853)

Chromosome 2D - NC_053036.2Genomic Context describing neighboring genes Neighboring gene germin-like protein 4-1 Neighboring gene germin-like protein 4-1 Neighboring gene pentatricopeptide repeat-containing protein At3g14580, mitochondrial Neighboring gene transfer RNA arginine (anticodon CCG)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mannosyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: GPI mannosyltransferase 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053036.2 Reference Aet v5.0 Primary Assembly

    Range
    563516162..563521604
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020311900.3 → XP_020167489.1  LOW QUALITY PROTEIN: GPI mannosyltransferase 2

    UniProtKB/TrEMBL
    N1QX97
    Conserved Domains (1) summary
    cl21590
    Location:12 → 502
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases