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LOC109751300 polygalacturonate 4-alpha-galacturonosyltransferase [ Aegilops tauschii ]

Gene ID: 109751300, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109751300
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109751300 in Genome Data Viewer
Location:
chromosome: 4D
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 4D NC_053038.2 (11570853..11574665)
101 previous assembly Aet v4.0 (GCF_002575655.1) 4D NC_053038.1 (11542272..11546087)

Chromosome 4D - NC_053038.2Genomic Context describing neighboring genes Neighboring gene protein FLOURY ENDOSPERM 6, chloroplastic Neighboring gene protein NRT1/ PTR FAMILY 2.11 Neighboring gene vegetative cell wall protein gp1 Neighboring gene heterogeneous nuclear ribonucleoprotein A2 homolog 1 Neighboring gene small nucleolar RNA Z161/Z228

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053038.2 Reference Aet v5.0 Primary Assembly

    Range
    11570853..11574665
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020310191.3 → XP_020165780.1  polygalacturonate 4-alpha-galacturonosyltransferase

    UniProtKB/TrEMBL
    A0A453H3M1, N1QVT1
    Conserved Domains (1) summary
    cl28622
    Location:65 → 587
    PLN02870; Probable galacturonosyltransferase
Nucleotide Protein
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