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LOC109742521 callose synthase 12 [ Aegilops tauschii ]

Gene ID: 109742521, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109742521
Gene description
callose synthase 12
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109742521 in Genome Data Viewer
Location:
chromosome: 3D
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 3D NC_053037.2 (350317253..350323706, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 3D NC_053037.1 (349874219..349880704, complement)

Chromosome 3D - NC_053037.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123497719 Neighboring gene protein DEHYDRATION-INDUCED 19 homolog 3 Neighboring gene small nucleolar RNA J33 Neighboring gene zinc finger MYM-type protein 1 Neighboring gene proline-rich receptor-like protein kinase PERK8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: callose synthase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053037.2 Reference Aet v5.0 Primary Assembly

    Range
    350317253..350323706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020301614.3 → XP_020157203.2  LOW QUALITY PROTEIN: callose synthase 12

    UniProtKB/TrEMBL
    M8BS30
    Conserved Domains (2) summary
    cd14964
    Location:1623 → 1645
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:1623 → 1745
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
Nucleotide Protein
Heading Accession and Version

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