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LOC109741815 xyloglucan galactosyltransferase KATAMARI1 homolog [ Aegilops tauschii ]

Gene ID: 109741815, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109741815
Gene description
xyloglucan galactosyltransferase KATAMARI1 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109741815 in Genome Data Viewer
Location:
chromosome: 1D
Exon count:
1
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 1D NC_053035.2 (205198799..205201221, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 1D NC_053035.1 (204808856..204811302, complement)

Chromosome 1D - NC_053035.2Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At3g47570 Neighboring gene uncharacterized LOC109741811 Neighboring gene GATA-type transcription factor SRE1-like Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene uncharacterized LOC109750848

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan galactosyltransferase KATAMARI1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053035.2 Reference Aet v5.0 Primary Assembly

    Range
    205198799..205201221 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020300897.3 → XP_020156486.1  xyloglucan galactosyltransferase KATAMARI1 homolog

    UniProtKB/TrEMBL
    A0A452YC86, A0A452YCB4
    Conserved Domains (1) summary
    pfam03016
    Location:122 → 467
    Exostosin; Exostosin family
Nucleotide Protein
Heading Accession and Version

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