U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109741750 hydroxyproline O-galactosyltransferase GALT5 [ Aegilops tauschii ]

Gene ID: 109741750, updated on 11-Jan-2024

Summary

Go to the top of the page Help
Gene symbol
LOC109741750
Gene description
hydroxyproline O-galactosyltransferase GALT5
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC109741750 in Genome Data Viewer
Location:
chromosome: 4D
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 4D NC_053038.2 (14486653..14491941, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 4D NC_053038.1 (14479162..14484546, complement)

Chromosome 4D - NC_053038.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109741817 Neighboring gene uncharacterized LOC120962698 Neighboring gene protein SOSEKI 3 Neighboring gene uncharacterized LOC109741741 Neighboring gene uncharacterized LOC109741734

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
hydroxyproline O-galactosyltransferase GALT5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053038.2 Reference Aet v5.0 Primary Assembly

    Range
    14486653..14491941 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020300827.3 → XP_020156416.1  hydroxyproline O-galactosyltransferase GALT5 isoform X1

    Conserved Domains (1) summary
    PLN03133
    Location:136 → 608
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  2. XM_020300837.3 → XP_020156426.1  hydroxyproline O-galactosyltransferase GALT5 isoform X2

    UniProtKB/TrEMBL
    A0A453H499
    Conserved Domains (1) summary
    PLN03133
    Location:136 → 602
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases