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LOC109735056 glucan endo-1,3-beta-glucosidase 12 [ Aegilops tauschii ]

Gene ID: 109735056, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109735056
Gene description
glucan endo-1,3-beta-glucosidase 12
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109735056 in Genome Data Viewer
Location:
chromosome: 6D
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 6D NC_053040.2 (27488907..27492808)
101 previous assembly Aet v4.0 (GCF_002575655.1) 6D NC_053040.1 (27323248..27327142)

Chromosome 6D - NC_053040.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123494579 Neighboring gene signal peptide peptidase 1 Neighboring gene putative pentatricopeptide repeat-containing protein At1g53330 Neighboring gene uncharacterized LOC109735055 Neighboring gene uncharacterized LOC120966094

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053040.2 Reference Aet v5.0 Primary Assembly

    Range
    27488907..27492808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020294255.3 → XP_020149844.1  glucan endo-1,3-beta-glucosidase 12

    UniProtKB/TrEMBL
    A0A453MWI8
    Conserved Domains (3) summary
    smart00768
    Location:253 → 338
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:58 → 218
    Glyco_hydro_1; Glycosyl hydrolase family 1
    cl27601
    Location:320 → 420
    Pectinesterase
Nucleotide Protein
Heading Accession and Version

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