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LINC02235 long intergenic non-protein coding RNA 2235 [ Homo sapiens (human) ]

Gene ID: 109729147, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02235provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2235provided by HGNC
Primary source
HGNC:HGNC:53106
See related
Ensembl:ENSG00000254689 AllianceGenome:HGNC:53106
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
8q21.13
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (81842619..81923660)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (82274255..82355312)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (82754854..82835895)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene charged multivesicular body protein 4C Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:82695196-82696395 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 36 Neighboring gene MPRA-validated peak7089 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:82753494-82754426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27586 Neighboring gene sorting nexin 16 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:82777682-82778503 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:82796025-82796191 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:82807716-82808490 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:82810041-82810814 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:82850908-82851478 Neighboring gene long intergenic non-protein coding RNA 2839 Neighboring gene uncharacterized LOC105375930

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features. Lanzós A, et al. Sci Rep, 2017 Jan 27. PMID 28128360, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RP11-354A14.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_170312.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087349
    Related
    ENST00000660951.1

  2. NR_170313.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087349, AC104018
    Related
    ENST00000671467.1

  3. NR_170314.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087349, AC104018
    Related
    ENST00000660458.1

  4. NR_170315.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087349, AC104018

  5. NR_170316.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087349, AC104018

  6. NR_170317.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087349, AC104018

  7. NR_170318.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087349, AC104018

  8. NR_170319.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087349, AC104018

  9. NR_170320.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087349, AC104018

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    81842619..81923660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    82274255..82355312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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