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LOC109721316 uncharacterized protein C18orf8 [ Ananas comosus (pineapple) ]

Gene ID: 109721316, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109721316
Gene description
uncharacterized protein C18orf8
Gene type
protein coding
RefSeq status
MODEL
Organism
Ananas comosus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Bromeliaceae; Bromelioideae; Ananas
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Genomic context

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See LOC109721316 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
16
Annotation release Status Assembly LG Location
100 current ASM154086v1 (GCF_001540865.1) 15 NC_033635.1 (2660093..2667837, complement)

Linkage Group 15 - NC_033635.1Genomic Context describing neighboring genes Neighboring gene mRNA-capping enzyme-like Neighboring gene protein prickle Neighboring gene zinc finger protein 8-like Neighboring gene uncharacterized LOC109721759 Neighboring gene pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033635.1 Chromosome 15 Reference ASM154086v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mon1-Ccz1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein C18orf8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ananas comosus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM154086v1 Primary Assembly

Genomic

  1. NC_033635.1 Reference ASM154086v1 Primary Assembly

    Range
    2660093..2667837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020248863.1 → XP_020104452.1  uncharacterized protein C18orf8 isoform X1

    UniProtKB/TrEMBL
    A0A6P5G9H5
    Conserved Domains (1) summary
    pfam07035
    Location:564 → 711
    Mic1; Colon cancer-associated protein Mic1-like

  2. XM_020248862.1 → XP_020104451.1  uncharacterized protein C18orf8 isoform X1

    UniProtKB/TrEMBL
    A0A6P5G9H5
    Conserved Domains (1) summary
    pfam07035
    Location:564 → 711
    Mic1; Colon cancer-associated protein Mic1-like

  3. XM_020248861.1 → XP_020104450.1  uncharacterized protein C18orf8 isoform X1

    UniProtKB/TrEMBL
    A0A6P5G9H5
    Conserved Domains (1) summary
    pfam07035
    Location:564 → 711
    Mic1; Colon cancer-associated protein Mic1-like

  4. XM_020248860.1 → XP_020104449.1  uncharacterized protein C18orf8 isoform X1

    UniProtKB/TrEMBL
    A0A6P5G9H5
    Conserved Domains (1) summary
    pfam07035
    Location:564 → 711
    Mic1; Colon cancer-associated protein Mic1-like

  5. XM_020248866.1 → XP_020104455.1  uncharacterized protein C18orf8 isoform X3

    UniProtKB/TrEMBL
    A0A6P5GGI3, A0A6V7Q4R8
    Conserved Domains (1) summary
    pfam07035
    Location:564 → 711
    Mic1; Colon cancer-associated protein Mic1-like

  6. XM_020248865.1 → XP_020104454.1  uncharacterized protein C18orf8 isoform X3

    UniProtKB/TrEMBL
    A0A6P5GGI3, A0A6V7Q4R8
    Conserved Domains (1) summary
    pfam07035
    Location:564 → 711
    Mic1; Colon cancer-associated protein Mic1-like

  7. XM_020248864.1 → XP_020104453.1  uncharacterized protein C18orf8 isoform X2

    UniProtKB/TrEMBL
    A0A199VUQ8, A0A6V7Q4R8
    Conserved Domains (1) summary
    pfam07035
    Location:564 → 711
    Mic1; Colon cancer-associated protein Mic1-like
Nucleotide Protein
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