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Bend5 BEN domain containing 5 [ Castor canadensis (American beaver) ]

Gene ID: 109701004, updated on 14-Mar-2024

Summary

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Gene symbol
Bend5
Gene description
BEN domain containing 5
See related
Ensembl:ENSCCNG00000008893
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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See Bend5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017873049.1 (302057..352361)

NW_017873049.1Genomic Context describing neighboring genes Neighboring gene AGBL carboxypeptidase 4 Neighboring gene vesicle transport through interaction with t-SNAREs homolog 1B pseudogene Neighboring gene spermatogenesis associated 6 Neighboring gene solute carrier family 5 member 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017873049.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BEN domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017873049.1 Reference C.can genome v1.0

    Range
    302057..352361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020186365.1 → XP_020041954.1  BEN domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A250YDK5
    Conserved Domains (1) summary
    pfam10523
    Location:154 → 228
    BEN; BEN domain

  2. XM_020186364.1 → XP_020041953.1  BEN domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0WI09
    Related
    ENSCCNP00000008390.1, ENSCCNT00000011067.1
    Conserved Domains (3) summary
    pfam05667
    Location:174 → 245
    DUF812; Protein of unknown function (DUF812)
    pfam10523
    Location:324 → 401
    BEN; BEN domain
    cl25732
    Location:70 → 277
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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