U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109699851 mannose-binding protein A-like [ Castor canadensis (American beaver) ]

Gene ID: 109699851, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC109699851
Gene description
mannose-binding protein A-like
See related
Ensembl:ENSCCNG00000026225
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC109699851 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017872645.1 (169211..171510, complement)

NW_017872645.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 254-like Neighboring gene surfactant protein D Neighboring gene pulmonary surfactant-associated protein A

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_017872645.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in surfactant homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
mannose-binding protein A-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017872645.1 Reference C.can genome v1.0

    Range
    169211..171510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020184723.1 → XP_020040312.1  mannose-binding protein A-like

    UniProtKB/TrEMBL
    A0A8B7W8J3
    Related
    ENSCCNP00000027087.1, ENSCCNT00000034314.1
    Conserved Domains (2) summary
    cd03591
    Location:131 → 241
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:40 → 91
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases