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LOC109699043 mitochondrial basic amino acids transporter [ Castor canadensis (American beaver) ]

Gene ID: 109699043, updated on 9-Nov-2023

Summary

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Gene symbol
LOC109699043
Gene description
mitochondrial basic amino acids transporter
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Also known as
SLC25A29
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Genomic context

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See LOC109699043 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017872432.1 (295193..310138)

NW_017872432.1Genomic Context describing neighboring genes Neighboring gene tryptophanyl-tRNA synthetase 1 Neighboring gene solute carrier family 25 member 47

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017872432.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high-affinity L-arginine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial basic amino acids transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017872432.1 Reference C.can genome v1.0

    Range
    295193..310138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020183551.1 → XP_020039140.1  mitochondrial basic amino acids transporter isoform X2

    UniProtKB/TrEMBL
    A0A250YET8, A0A8C0WLQ9
    Conserved Domains (1) summary
    pfam00153
    Location:91 → 180
    Mito_carr; Mitochondrial carrier protein

  2. XM_020183550.1 → XP_020039139.1  mitochondrial basic amino acids transporter isoform X1

    UniProtKB/TrEMBL
    A0A8B7W5V2
    Conserved Domains (2) summary
    pfam00153
    Location:158 → 247
    Mito_carr; Mitochondrial carrier protein
    cl28162
    Location:94 → 146
    Mito_carr; Mitochondrial carrier protein

  3. XM_020183552.1 → XP_020039141.1  mitochondrial basic amino acids transporter isoform X3

    UniProtKB/TrEMBL
    A0A8B7W4R0
    Conserved Domains (1) summary
    pfam00153
    Location:25 → 114
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
Heading Accession and Version

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