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Lss lanosterol synthase [ Castor canadensis (American beaver) ]

Gene ID: 109695890, updated on 14-Mar-2024

Summary

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Gene symbol
Lss
Gene description
lanosterol synthase
See related
Ensembl:ENSCCNG00000000756
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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See Lss in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017871737.1 (307619..351596, complement)

NW_017871737.1Genomic Context describing neighboring genes Neighboring gene formimidoyltransferase cyclodeaminase Neighboring gene spermatogenesis and centriole associated 1 like Neighboring gene minichromosome maintenance complex component 3 associated protein Neighboring gene ybeY metalloendoribonuclease

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017871737.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lanosterol synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triterpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lanosterol synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017871737.1 Reference C.can genome v1.0

    Range
    307619..351596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020178665.1 → XP_020034254.1  lanosterol synthase isoform X3

    UniProtKB/TrEMBL
    A0A8B7VSL5
    Conserved Domains (1) summary
    TIGR01787
    Location:1 → 595
    squalene_cyclas; squalene/oxidosqualene cyclases

  2. XM_020178664.1 → XP_020034253.1  lanosterol synthase isoform X2

    UniProtKB/TrEMBL
    A0A8C0VU78
    Related
    ENSCCNP00000000718.1, ENSCCNT00000000931.1
    Conserved Domains (1) summary
    TIGR01787
    Location:77 → 700
    squalene_cyclas; squalene/oxidosqualene cyclases

  3. XM_020178663.1 → XP_020034252.1  lanosterol synthase isoform X1

    UniProtKB/TrEMBL
    A0A250YL20
    Related
    ENSCCNP00000000677.1, ENSCCNT00000000872.1
    Conserved Domains (1) summary
    TIGR01787
    Location:77 → 722
    squalene_cyclas; squalene/oxidosqualene cyclases

RNA

  1. XR_002213263.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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