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Lman2l lectin, mannose binding 2 like [ Castor canadensis (American beaver) ]

Gene ID: 109687876, updated on 19-Jun-2024

Summary

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Gene symbol
Lman2l
Gene description
lectin, mannose binding 2 like
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Lman2l in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017870659.1 (175900..196816, complement)

NW_017870659.1Genomic Context describing neighboring genes Neighboring gene cytosolic purine 5'-nucleotidase Neighboring gene metal transporter CNNM2-like Neighboring gene metal transporter CNNM4-like Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017870659.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017870659.1 Reference C.can genome v1.0

    Range
    175900..196816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020165979.1 → XP_020021568.1  VIP36-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8B7UPT0
    Conserved Domains (1) summary
    cl14058
    Location:49 → 297
    lectin_L-type; legume lectins

  2. XM_020165980.1 → XP_020021569.1  VIP36-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8B7UTH9
    Conserved Domains (1) summary
    cl14058
    Location:24 → 153
    lectin_L-type; legume lectins

  3. XM_020165978.1 → XP_020021567.1  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8B7UQJ4
    Conserved Domains (1) summary
    cl14058
    Location:49 → 308
    lectin_L-type; legume lectins

  4. XM_020165981.1 → XP_020021570.1  VIP36-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8B7UTH9
    Conserved Domains (1) summary
    cl14058
    Location:24 → 153
    lectin_L-type; legume lectins
Nucleotide Protein
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