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LOC109683396 chondroitin sulfate synthase 3-like [ Castor canadensis (American beaver) ]

Gene ID: 109683396, updated on 9-Nov-2023

Summary

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Gene symbol
LOC109683396
Gene description
chondroitin sulfate synthase 3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
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Genomic context

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See LOC109683396 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017870112.1 (717937..721572, complement)

NW_017870112.1Genomic Context describing neighboring genes Neighboring gene exostosin-1 pseudogene Neighboring gene sterile alpha motif domain containing 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017870112.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017870112.1 Reference C.can genome v1.0

    Range
    717937..721572 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020159202.1 → XP_020014791.1  chondroitin sulfate synthase 3-like

    UniProtKB/TrEMBL
    A0A8B7U5T9
    Conserved Domains (2) summary
    cl11394
    Location:331 → 365
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl21608
    Location:174 → 354
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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