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Lxn latexin [ Castor canadensis (American beaver) ]

Gene ID: 109682229, updated on 14-Mar-2024

Summary

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Gene symbol
Lxn
Gene description
latexin
See related
Ensembl:ENSCCNG00000028034
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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See Lxn in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017869509.1 (72457..78101)

NW_017869509.1Genomic Context describing neighboring genes Neighboring gene retinoic acid receptor responder 1 Neighboring gene G elongation factor mitochondrial 1 Neighboring gene myeloid leukemia factor 1 Neighboring gene tRNA:m(4)X modification enzyme TRM13 homolog pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017869509.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
latexin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017869509.1 Reference C.can genome v1.0

    Range
    72457..78101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020157356.1 → XP_020012945.1  latexin

    UniProtKB/TrEMBL
    A0A250YCT5
    Related
    ENSCCNP00000029209.1, ENSCCNT00000036835.1
    Conserved Domains (1) summary
    pfam06907
    Location:3 → 218
    Latexin
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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