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ext1c exostoses (multiple) 1c [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109639984, updated on 5-Nov-2024

Summary

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Gene symbol
ext1c
Gene description
exostoses (multiple) 1c
See related
EnsemblRapid:ENSPOLG00010007139
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
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Genomic context

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See ext1c in Genome Data Viewer
Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_10 current ASM2471397v2 (GCF_024713975.1) 20 NC_091112.1 (4541879..4614406, complement)
100 previous assembly Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859711.1 (387004..400339)

Chromosome 20 - NC_091112.1Genomic Context describing neighboring genes Neighboring gene integumentary mucin A.1 Neighboring gene mediator of RNA polymerase II transcription subunit 30 Neighboring gene probable thiopurine S-methyltransferase Neighboring gene syndecan 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1c
Names
exostosin-1c pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024713975.1-RS_2024_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2471397v2 Primary Assembly

Genomic

  1. NC_091112.1 Reference ASM2471397v2 Primary Assembly

    Range
    4541879..4614406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_069516841.1 → XP_069372942.1  exostosin-1c isoform X2

  2. XM_069516840.1 → XP_069372941.1  exostosin-1c isoform X1

  3. XM_069516842.1 → XP_069372943.1  exostosin-1c isoform X2

    Related
    ENSPOLP00010013161.1, ENSPOLT00010016574.1
Nucleotide Protein
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