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LOC109639539 lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109639539, updated on 30-Oct-2024

Summary

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Gene symbol
LOC109639539
Gene description
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
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Genomic context

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See LOC109639539 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_10 current ASM2471397v2 (GCF_024713975.1) 16 NC_091108.1 (15409525..15415089, complement)
100 previous assembly Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859643.1 (8483703..8489231)

Chromosome 16 - NC_091108.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA81 Neighboring gene small nucleolar RNA SNORA81 Neighboring gene eukaryotic translation initiation factor 4A2 Neighboring gene F-box-like/WD repeat-containing protein TBL1XR1 Neighboring gene calcium-activated potassium channel subunit beta-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024713975.1-RS_2024_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2471397v2 Primary Assembly

Genomic

  1. NC_091108.1 Reference ASM2471397v2 Primary Assembly

    Range
    15409525..15415089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020103057.2 → XP_019958616.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

    Conserved Domains (1) summary
    cl21608
    Location:102 → 308
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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