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chst11 carbohydrate (chondroitin 4) sulfotransferase 11 [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109637571, updated on 5-Nov-2024

Summary

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Gene symbol
chst11
Gene description
carbohydrate (chondroitin 4) sulfotransferase 11
See related
EnsemblRapid:ENSPOLG00010013191
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
human zebrafish all
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Genomic context

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See chst11 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_10 current ASM2471397v2 (GCF_024713975.1) 23 NC_091115.1 (16766990..16841992)
100 previous assembly Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859676.1 (883413..947025, complement)

Chromosome 23 - NC_091115.1Genomic Context describing neighboring genes Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene protein chibby homolog 1-like Neighboring gene uncharacterized LOC138406835 Neighboring gene solute carrier family 41 member 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024713975.1-RS_2024_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2471397v2 Primary Assembly

Genomic

  1. NC_091115.1 Reference ASM2471397v2 Primary Assembly

    Range
    16766990..16841992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020100030.2 → XP_019955589.1  carbohydrate sulfotransferase 11 isoform X1

    Conserved Domains (1) summary
    pfam03567
    Location:113 → 343
    Sulfotransfer_2; Sulfotransferase family

  2. XM_020100031.2 → XP_019955590.1  carbohydrate sulfotransferase 11 isoform X2

    Related
    ENSPOLP00010032809.1, ENSPOLT00010037294.1
    Conserved Domains (1) summary
    pfam03567
    Location:108 → 338
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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