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b4galnt1a beta-1,4-N-acetyl-galactosaminyl transferase 1a [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109630534, updated on 14-Mar-2024

Summary

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Gene symbol
b4galnt1a
Gene description
beta-1,4-N-acetyl-galactosaminyl transferase 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
zebrafish all
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Genomic context

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See b4galnt1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859655.1 (240464..251336, complement)

NW_017859655.1Genomic Context describing neighboring genes Neighboring gene Sp5 transcription factor-like Neighboring gene solute carrier family 26 member 10 Neighboring gene core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a Neighboring gene tachykinin precursor 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859655.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859655.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    240464..251336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020088790.1 → XP_019944349.1  beta-1,4 N-acetylgalactosaminyltransferase 1-like isoform X3

    Conserved Domains (1) summary
    pfam00535
    Location:274 → 398
    Glycos_transf_2; Glycosyl transferase family 2

  2. XM_020088789.1 → XP_019944348.1  beta-1,4 N-acetylgalactosaminyltransferase 1-like isoform X2

    Conserved Domains (1) summary
    pfam00535
    Location:275 → 399
    Glycos_transf_2; Glycosyl transferase family 2

  3. XM_020088788.1 → XP_019944347.1  beta-1,4 N-acetylgalactosaminyltransferase 1-like isoform X1

    Conserved Domains (1) summary
    pfam00535
    Location:280 → 404
    Glycos_transf_2; Glycosyl transferase family 2
Nucleotide Protein
Heading Accession and Version

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