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ogt.1 O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109626074, updated on 30-Oct-2024

Summary

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Gene symbol
ogt.1
Gene description
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Also known as
ogt
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Genomic context

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See ogt.1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_10 current ASM2471397v2 (GCF_024713975.1) 9 NC_091101.1 (12149123..12162721, complement)
100 previous assembly Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859641.1 (11990783..12004441)

Chromosome 9 - NC_091101.1Genomic Context describing neighboring genes Neighboring gene adenosine receptor A2b-like Neighboring gene germ cell nuclear acidic peptidase Neighboring gene FH2 domain containing 2 Neighboring gene ras homolog gene family, member Gd

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein O-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024713975.1-RS_2024_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2471397v2 Primary Assembly

Genomic

  1. NC_091101.1 Reference ASM2471397v2 Primary Assembly

    Range
    12149123..12162721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_069531417.1 → XP_069387518.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X9

  2. XM_069531416.1 → XP_069387517.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X5

  3. XM_020081754.2 → XP_019937313.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X3

    Conserved Domains (3) summary
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:552 → 1031
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:21 → 450
    TPR_11; TPR repeat

  4. XM_020081780.2 → XP_019937339.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X7

    Conserved Domains (3) summary
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:556 → 1023
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:31 → 460
    TPR_11; TPR repeat

  5. XM_020081747.2 → XP_019937306.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

    Conserved Domains (3) summary
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:556 → 1035
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:31 → 460
    TPR_11; TPR repeat

  6. XM_020081762.2 → XP_019937321.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X4

    Conserved Domains (3) summary
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:562 → 1029
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:31 → 460
    TPR_11; TPR repeat

  7. XM_020081738.2 → XP_019937297.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

    Conserved Domains (3) summary
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:562 → 1041
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:31 → 460
    TPR_11; TPR repeat

  8. XM_020081810.2 → XP_019937369.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X11

    Conserved Domains (3) summary
    sd00006
    Location:117 → 145
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:386 → 865
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:6 → 351
    TPR_11; TPR repeat

  9. XM_020081795.2 → XP_019937354.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X10

    Conserved Domains (3) summary
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:546 → 1013
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:21 → 450
    TPR_11; TPR repeat

  10. XM_020081772.2 → XP_019937331.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X6

    Conserved Domains (3) summary
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:546 → 1025
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:21 → 450
    TPR_11; TPR repeat

  11. XM_020081788.2 → XP_019937347.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X8

    Conserved Domains (3) summary
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:556 → 1023
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:31 → 460
    TPR_11; TPR repeat
Nucleotide Protein
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