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SNORA50D small nucleolar RNA, H/ACA box 50D [ Homo sapiens (human) ]

Gene ID: 109616958, updated on 10-Oct-2023

Summary

Official Symbol
SNORA50Dprovided by HGNC
Official Full Name
small nucleolar RNA, H/ACA box 50Dprovided by HGNC
Primary source
HGNC:HGNC:50433
See related
Ensembl:ENSG00000280894 AllianceGenome:HGNC:50433
Gene type
snoRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
5q13.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (69160808..69160939)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (69983391..69983522)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (68456635..68456766)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 3C pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr5:68370875-68371043 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16075 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22638 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16076 Neighboring gene Sharpr-MPRA regulatory region 11799 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:68396101-68396678 Neighboring gene solute carrier family 30 member 5 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:68462657-68463622 Neighboring gene small nucleolar RNA U13 Neighboring gene cyclin B1 Neighboring gene uncharacterized LOC112267932 Neighboring gene Sharpr-MPRA regulatory region 51

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_145732.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC010273
    Related
    ENST00000627561.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    69160808..69160939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    69983391..69983522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)