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Chpf Chondroitin polymerizing factor [ Aethina tumida (small hive beetle) ]

Gene ID: 109602973, updated on 23-May-2024

Summary

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Gene symbol
Chpf
Gene description
Chondroitin polymerizing factor
See related
EnsemblRapid:ENSATDG00005012142
Gene type
protein coding
RefSeq status
MODEL
Organism
Aethina tumida
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Nitidulidae; Nitidulinae; Aethina
Orthologs
fruit fly all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
101 current icAetTumi1.1 (GCF_024364675.1) 6 NC_065440.1 (19114628..19117367)
100 previous assembly Atum_1.0 (GCF_001937115.1) Unplaced Scaffold NW_017853379.1 (110650..113278)

Chromosome 6 - NC_065440.1Genomic Context describing neighboring genes Neighboring gene lysosomal acid phosphatase Neighboring gene uncharacterized LOC109602974 Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC109602996 Neighboring gene ALG6 alpha-1,3-glucosyltransferase garnysstan

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aethina tumida Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icAetTumi1.1 Primary Assembly

Genomic

  1. NC_065440.1 Reference icAetTumi1.1 Primary Assembly

    Range
    19114628..19117367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020019421.2 → XP_019874980.1  chondroitin sulfate synthase 2

    Related
    ENSATDP00005018301.1, ENSATDT00005020557.1
    Conserved Domains (1) summary
    cl11394
    Location:226 → 701
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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