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sfl N-deacetylase and N-sulfotransferase sfl [ Aethina tumida (small hive beetle) ]

Gene ID: 109601769, updated on 22-May-2024

Summary

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Gene symbol
sfl
Gene description
N-deacetylase and N-sulfotransferase sfl
See related
EnsemblRapid:ENSATDG00005008978
Gene type
protein coding
RefSeq status
MODEL
Organism
Aethina tumida
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Nitidulidae; Nitidulinae; Aethina
Orthologs
fruit fly all
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Genomic context

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See sfl in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
101 current icAetTumi1.1 (GCF_024364675.1) 4 NC_065438.1 (977409..986611, complement)
100 previous assembly Atum_1.0 (GCF_001937115.1) Unplaced Scaffold NW_017853279.1 (97376..106599, complement)

Chromosome 4 - NC_065438.1Genomic Context describing neighboring genes Neighboring gene protein FAM32A Neighboring gene E3 ubiquitin-protein ligase parkin Neighboring gene alpha-1,3/1,6-mannosyltransferase ALG2 Neighboring gene cuticle protein Neighboring gene transfer RNA lysine (anticodon UUU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aethina tumida Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icAetTumi1.1 Primary Assembly

Genomic

  1. NC_065438.1 Reference icAetTumi1.1 Primary Assembly

    Range
    977409..986611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020018052.2 → XP_019873611.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

    Related
    ENSATDP00005013917.1, ENSATDT00005015348.1
    Conserved Domains (2) summary
    pfam00685
    Location:615 → 830
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:37 → 526
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

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