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LOC109599301 irregular chiasm C-roughest protein-like [ Aethina tumida (small hive beetle) ]

Gene ID: 109599301, updated on 23-Nov-2023

Summary

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Gene symbol
LOC109599301
Gene description
irregular chiasm C-roughest protein-like
See related
EnsemblRapid:ENSATDG00005009040
Gene type
protein coding
RefSeq status
MODEL
Organism
Aethina tumida
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Nitidulidae; Nitidulinae; Aethina
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Genomic context

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See LOC109599301 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
101 current icAetTumi1.1 (GCF_024364675.1) 2 NC_065436.1 (442453..526873, complement)
100 previous assembly Atum_1.0 (GCF_001937115.1) Unplaced Scaffold NW_017853128.1 (35033..88220, complement)

Chromosome 2 - NC_065436.1Genomic Context describing neighboring genes Neighboring gene GPN-loop GTPase 2 Neighboring gene uncharacterized LOC109599298 Neighboring gene uncharacterized LOC126264587 Neighboring gene alpha-crystallin A chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aethina tumida Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icAetTumi1.1 Primary Assembly

Genomic

  1. NC_065436.1 Reference icAetTumi1.1 Primary Assembly

    Range
    442453..526873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049963039.1 → XP_049818996.1  irregular chiasm C-roughest protein-like

  2. XM_049963041.1 → XP_049818998.1  irregular chiasm C-roughest protein-like

    Related
    ENSATDP00005014031.1, ENSATDT00005015461.1

  3. XM_049963040.1 → XP_049818997.1  irregular chiasm C-roughest protein-like

  4. XM_020015271.2 → XP_019870830.1  irregular chiasm C-roughest protein-like

    Conserved Domains (4) summary
    smart00409
    Location:34 → 128
    IG; Immunoglobulin
    pfam08205
    Location:135 → 223
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13927
    Location:328 → 393
    Ig_3; Immunoglobulin domain
    cl11960
    Location:410 → 504
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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