U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

KIRREL1 kirre like nephrin family adhesion molecule 1 [ Bos indicus (zebu cattle) ]

Gene ID: 109579054, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
KIRREL1
Gene description
kirre like nephrin family adhesion molecule 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
KIRREL
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See KIRREL1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 3 NC_032652.1 (13506099..13611233, complement)

Chromosome 3 - NC_032652.1Genomic Context describing neighboring genes Neighboring gene antigen-presenting glycoprotein CD1d-like Neighboring gene ferritin heavy chain pseudogene Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene Fc receptor-like protein 2 Neighboring gene 40S ribosomal protein S15a pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_032652.1 Chromosome 3 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: kin of IRRE-like protein 1
Names
kin of IRRE like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032652.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    13506099..13611233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019988542.1 → XP_019844101.1  LOW QUALITY PROTEIN: kin of IRRE-like protein 1

    UniProtKB/TrEMBL
    A0A6P5E0P6
    Conserved Domains (4) summary
    cd05759
    Location:138 → 219
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:394 → 491
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    cd00096
    Location:336 → 376
    Ig; Immunoglobulin domain
    cl28434
    Location:22 → 116
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.