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LOC109571966 glycogen [starch] synthase, muscle [ Bos indicus (zebu cattle) ]

Gene ID: 109571966, updated on 18-Sep-2024

Summary

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Gene symbol
LOC109571966
Gene description
glycogen [starch] synthase, muscle
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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Genomic context

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See LOC109571966 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 18 NC_032667.1 (55553745..55570218, complement)

Chromosome 18 - NC_032667.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily M member 4 Neighboring gene apoptosis regulator BAX Neighboring gene ferritin light chain Neighboring gene ruvB-like 2 Neighboring gene lutropin subunit beta-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032667.1 Chromosome 18 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen [starch] synthase, muscle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032667.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    55553745..55570218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019978489.1 → XP_019834048.1  glycogen [starch] synthase, muscle

    UniProtKB/TrEMBL
    A0A6P5D750
    Conserved Domains (1) summary
    pfam05693
    Location:31 → 663
    Glycogen_syn; Glycogen synthase
Nucleotide Protein
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