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SDF4 stromal cell derived factor 4 [ Bos indicus (zebu cattle) ]

Gene ID: 109570569, updated on 14-Mar-2024

Summary

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Gene symbol
SDF4
Gene description
stromal cell derived factor 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SDF4 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 16 NC_032665.1 (48547411..48554887)

Chromosome 16 - NC_032665.1Genomic Context describing neighboring genes Neighboring gene C1q and TNF related 12 Neighboring gene beta-1,3-galactosyltransferase 6 Neighboring gene TNF receptor superfamily member 4 Neighboring gene TNF receptor superfamily member 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032665.1 Chromosome 16 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A preliminary sketch of horn cancer transcriptome in Indian zebu cattle. Tripathi AK, et al. Gene, 2012 Feb 1. PMID 22134011
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-ion regulated exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
45 kDa calcium-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032665.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    48547411..48554887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019976623.1 → XP_019832182.1  45 kDa calcium-binding protein

    UniProtKB/TrEMBL
    A0A6P5D5F2
    Conserved Domains (1) summary
    cd16225
    Location:36 → 316
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)
Nucleotide Protein
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Gene LinkOut

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