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PATL1 PAT1 homolog 1, processing body mRNA decay factor [ Bos indicus (zebu cattle) ]

Gene ID: 109569656, updated on 14-Mar-2024

Summary

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Gene symbol
PATL1
Gene description
PAT1 homolog 1, processing body mRNA decay factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See PATL1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 15 NC_032664.1 (83876871..83905025, complement)

Chromosome 15 - NC_032664.1Genomic Context describing neighboring genes Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene oxysterol binding protein Neighboring gene uncharacterized LOC109569296 Neighboring gene olfactory receptor 10V1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032664.1 Chromosome 15 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PAT1 homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032664.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    83876871..83905025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019975260.1 → XP_019830819.1  protein PAT1 homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5D0C6
    Conserved Domains (1) summary
    cl25764
    Location:480 → 614
    PAT1; Topoisomerase II-associated protein PAT1

  2. XM_019975259.1 → XP_019830818.1  protein PAT1 homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5CYK7
    Conserved Domains (1) summary
    cl25764
    Location:490 → 624
    PAT1; Topoisomerase II-associated protein PAT1
Nucleotide Protein
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