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TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Bos indicus (zebu cattle) ]

Gene ID: 109566935, updated on 14-Mar-2024

Summary

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Gene symbol
TMTC4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See TMTC4 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 12 NC_032661.1 (75124082..75174425, complement)

Chromosome 12 - NC_032661.1Genomic Context describing neighboring genes Neighboring gene propionyl-CoA carboxylase subunit alpha Neighboring gene transfer RNA glycine (anticodon ACC) Neighboring gene uncharacterized LOC109566934 Neighboring gene sodium leak channel, non-selective Neighboring gene integrin subunit beta like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032661.1 Chromosome 12 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 4
Names
transmembrane and tetratricopeptide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032661.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    75124082..75174425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019971679.1 → XP_019827238.1  transmembrane and TPR repeat-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A6P5CP16
    Conserved Domains (3) summary
    COG0457
    Location:454 → 686
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:455 → 483
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:267 → 339
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_019971678.1 → XP_019827237.1  transmembrane and TPR repeat-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A6P5CQT6
    Conserved Domains (3) summary
    COG0457
    Location:480 → 712
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:481 → 509
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:293 → 365
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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