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LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [ Bos indicus (zebu cattle) ]

Gene ID: 109561793, updated on 14-Mar-2024

Summary

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Gene symbol
LSM7
Gene description
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See LSM7 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 7 NC_032656.1 (19992102..19996809)

Chromosome 7 - NC_032656.1Genomic Context describing neighboring genes Neighboring gene transmembrane serine protease 9 Neighboring gene signal peptide peptidase like 2B Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene leucine rich repeat and Ig domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032656.1 Chromosome 7 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032656.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    19992102..19996809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019964531.1 → XP_019820090.1  U6 snRNA-associated Sm-like protein LSm7

    UniProtKB/TrEMBL
    A0A6P5C3I9
    Conserved Domains (1) summary
    cd01729
    Location:9 → 97
    LSm7; Like-Sm protein 7
Nucleotide Protein
Heading Accession and Version

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