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SPP1 secreted phosphoprotein 1 [ Bos indicus (zebu cattle) ]

Gene ID: 109560352, updated on 14-Mar-2024

Summary

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Gene symbol
SPP1
Gene description
secreted phosphoprotein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SPP1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 6 NC_032655.1 (37513283..37520301, complement)

Chromosome 6 - NC_032655.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily G member 2 (JR blood group) Neighboring gene U2 small nuclear ribonucleoprotein A' pseudogene Neighboring gene polycystin 2, transient receptor potential cation channel Neighboring gene uncharacterized LOC109560130 Neighboring gene integrin binding sialoprotein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032655.1 Chromosome 6 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A preliminary sketch of horn cancer transcriptome in Indian zebu cattle. Tripathi AK, et al. Gene, 2012 Feb 1. PMID 22134011

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ossification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in osteoblast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of bone resorption IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
osteopontin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032655.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    37513283..37520301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019962489.1 → XP_019818048.1  osteopontin

    UniProtKB/TrEMBL
    A0A1B1PGI3
    Conserved Domains (1) summary
    smart00017
    Location:17 → 278
    OSTEO; Osteopontin
Nucleotide Protein
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