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NTN4 netrin 4 [ Bos indicus (zebu cattle) ]

Gene ID: 109559402, updated on 14-Mar-2024

Summary

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Gene symbol
NTN4
Gene description
netrin 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See NTN4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 5 NC_032654.1 (64442673..64573105, complement)

Chromosome 5 - NC_032654.1Genomic Context describing neighboring genes Neighboring gene neuronal differentiation 4 Neighboring gene thymocyte expressed, positive selection associated 1 Neighboring gene small nuclear ribonucleoprotein polypeptide F Neighboring gene amidohydrolase domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032654.1 Chromosome 5 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A preliminary sketch of horn cancer transcriptome in Indian zebu cattle. Tripathi AK, et al. Gene, 2012 Feb 1. PMID 22134011

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in basement membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of laminin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
netrin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032654.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    64442673..64573105 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019961109.1 → XP_019816668.1  netrin-4 isoform X2

    UniProtKB/TrEMBL
    A0A6P5BTW3
    Conserved Domains (5) summary
    smart00180
    Location:395 → 446
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:261 → 320
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd03578
    Location:519 → 629
    NTR_netrin-4_like; NTR domain, Netrin-4-like subfamily; composed of the C-terminal NTR domains of netrin-4 (beta netrin) and similar proteins. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural ...
    pfam00053
    Location:332 → 392
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:43 → 260
    Laminin_N; Laminin N-terminal (Domain VI)

  2. XM_019961110.1 → XP_019816669.1  netrin-4 isoform X3

    UniProtKB/TrEMBL
    A0A6P5BTV4
    Conserved Domains (4) summary
    cd00055
    Location:261 → 320
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd03578
    Location:516 → 626
    NTR_netrin-4_like; NTR domain, Netrin-4-like subfamily; composed of the C-terminal NTR domains of netrin-4 (beta netrin) and similar proteins. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural ...
    pfam00053
    Location:395 → 449
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:43 → 260
    Laminin_N; Laminin N-terminal (Domain VI)

  3. XM_019961108.1 → XP_019816667.1  netrin-4 isoform X1

    UniProtKB/TrEMBL
    A0A6P5BTX9
    Conserved Domains (5) summary
    smart00180
    Location:395 → 446
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:261 → 320
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd03578
    Location:520 → 630
    NTR_netrin-4_like; NTR domain, Netrin-4-like subfamily; composed of the C-terminal NTR domains of netrin-4 (beta netrin) and similar proteins. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural ...
    pfam00053
    Location:332 → 392
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:43 → 260
    Laminin_N; Laminin N-terminal (Domain VI)

  4. XM_019961111.1 → XP_019816670.1  netrin-4 isoform X4

    UniProtKB/TrEMBL
    A0A6P5BTW1
    Conserved Domains (4) summary
    cd00055
    Location:261 → 320
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd03578
    Location:515 → 625
    NTR_netrin-4_like; NTR domain, Netrin-4-like subfamily; composed of the C-terminal NTR domains of netrin-4 (beta netrin) and similar proteins. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural ...
    pfam00053
    Location:395 → 449
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:43 → 260
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
Heading Accession and Version

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