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LOC109541811 sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) [ Dendroctonus ponderosae (mountain pine beetle) ]

Gene ID: 109541811, updated on 30-Nov-2023

Summary

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Gene symbol
LOC109541811
Gene description
sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)
Locus tag
HUJ05_009035
See related
EnsemblRapid:LOC109541811
Gene type
protein coding
RefSeq status
MODEL
Organism
Dendroctonus ponderosae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Scolytinae; Dendroctonus
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Genomic context

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See LOC109541811 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Dpon_F_20191213v2 (GCF_020466585.1) Unplaced Scaffold NW_026019116.1 (4546474..4558023, complement)
100 previous assembly DendPond_male_1.0 (GCF_000355655.1) Unplaced Scaffold NW_017852245.1 (522357..534485, complement)

NW_026019116.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109541812 Neighboring gene nitric oxide synthase-interacting protein homolog Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene malonyl-CoA-acyl carrier protein transacylase beg Neighboring gene uncharacterized LOC109541831 Neighboring gene glycine cleavage system H protein, mitochondrial Neighboring gene Ran GTPase activating protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Quantitative metabolome, proteome and transcriptome analysis of midgut and fat body tissues in the mountain pine beetle, Dendroctonus ponderosae Hopkins, and insights into pheromone biosynthesis. Keeling CI, et al. Insect Biochem Mol Biol, 2016 Mar. PMID 26792242

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dendroctonus ponderosae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dpon_F_20191213v2

Genomic

  1. NW_026019116.1 Reference Dpon_F_20191213v2

    Range
    4546474..4558023 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019910783.2 → XP_019766342.1  sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) isoform X1

    Related
    XP_019766342.1
    Conserved Domains (1) summary
    cd06857
    Location:142 → 593
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_048669890.1 → XP_048525847.1  sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) isoform X2

  3. XM_019910784.2 → XP_019766343.1  sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) isoform X3

    UniProtKB/TrEMBL
    N6U4N6
    Related
    XP_019766343.1
    Conserved Domains (1) summary
    cd06857
    Location:64 → 515
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
Heading Accession and Version

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