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LOC109541705 longitudinals lacking protein [ Dendroctonus ponderosae (mountain pine beetle) ]

Gene ID: 109541705, updated on 10-May-2024

Summary

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Gene symbol
LOC109541705
Gene description
longitudinals lacking protein
Locus tag
HUJ05_008988
See related
EnsemblRapid:LOC109541705
Gene type
protein coding
RefSeq status
MODEL
Organism
Dendroctonus ponderosae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Scolytinae; Dendroctonus
Orthologs
fruit fly all
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Genomic context

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See LOC109541705 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
101 current Dpon_F_20191213v2 (GCF_020466585.1) Unplaced Scaffold NW_026019116.1 (4357488..4525090, complement)
100 previous assembly DendPond_male_1.0 (GCF_000355655.1) Unplaced Scaffold NW_017852245.1 (325073..500457, complement)

NW_026019116.1Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3 Neighboring gene putative fatty acyl-CoA reductase CG5065 Neighboring gene uncharacterized LOC125505614 Neighboring gene Fatty acid synthase 1 Neighboring gene uncharacterized LOC125505613 Neighboring gene RB-associated KRAB zinc finger protein Neighboring gene uncharacterized LOC125505612 Neighboring gene uncharacterized LOC109541812 Neighboring gene nitric oxide synthase-interacting protein homolog Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene malonyl-CoA-acyl carrier protein transacylase beg

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Quantitative metabolome, proteome and transcriptome analysis of midgut and fat body tissues in the mountain pine beetle, Dendroctonus ponderosae Hopkins, and insights into pheromone biosynthesis. Keeling CI, et al. Insect Biochem Mol Biol, 2016 Mar. PMID 26792242
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypermethylated in cancer 2 protein; longitudinals lacking protein, isoforms H/M/V; longitudinals lacking protein, isoforms J/P/Q/S/Z; protein abrupt; uncharacterized protein LOC109541705; zinc finger and BTB domain-containing protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dendroctonus ponderosae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dpon_F_20191213v2

Genomic

  1. NW_026019116.1 Reference Dpon_F_20191213v2

    Range
    4357488..4525090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019910632.2 → XP_019766191.1  longitudinals lacking protein, isoforms H/M/V isoform X7

    Related
    XP_019766191.1
    Conserved Domains (2) summary
    sd00017
    Location:430 → 450
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:22 → 117
    BTB; BTB/POZ domain

  2. XM_019910630.2 → XP_019766189.1  longitudinals lacking protein, isoforms H/M/V isoform X4

    Related
    XP_019766189.1
    Conserved Domains (3) summary
    COG5189
    Location:187 → 448
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:464 → 484
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:22 → 117
    BTB; BTB/POZ domain

  3. XM_019910628.2 → XP_019766187.2  zinc finger and BTB domain-containing protein 17 isoform X2

  4. XM_019910631.2 → XP_019766190.2  protein abrupt isoform X5

  5. XM_019910629.2 → XP_019766188.2  zinc finger and BTB domain-containing protein 17 isoform X3

  6. XM_048669716.1 → XP_048525673.1  hypermethylated in cancer 2 protein isoform X6

  7. XM_019910633.2 → XP_019766192.1  longitudinals lacking protein, isoforms J/P/Q/S/Z isoform X8

    Related
    XP_019766192.1
    Conserved Domains (1) summary
    pfam00651
    Location:22 → 117
    BTB; BTB/POZ domain

  8. XM_019910627.2 → XP_019766186.1  uncharacterized protein LOC109541705 isoform X1

    Related
    XP_019766186.1
    Conserved Domains (2) summary
    pfam00651
    Location:22 → 117
    BTB; BTB/POZ domain
    cl26511
    Location:603 → 747
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein
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