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LOC109536933 transcription factor hamlet [ Dendroctonus ponderosae (mountain pine beetle) ]

Gene ID: 109536933, updated on 30-Nov-2023

Summary

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Gene symbol
LOC109536933
Gene description
transcription factor hamlet
Locus tag
HUJ05_009835
See related
EnsemblRapid:LOC109536933
Gene type
protein coding
RefSeq status
MODEL
Organism
Dendroctonus ponderosae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Scolytinae; Dendroctonus
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Genomic context

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See LOC109536933 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Dpon_F_20191213v2 (GCF_020466585.1) Unplaced Scaffold NW_026018165.1 (2499184..2580650, complement)
100 previous assembly DendPond_male_1.0 (GCF_000355655.1) Unplaced Scaffold NW_017852028.1 (839735..921249, complement)

NW_026018165.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125503403 Neighboring gene uncharacterized LOC125503494 Neighboring gene uncharacterized LOC109536934 Neighboring gene uncharacterized LOC125503407 Neighboring gene uncharacterized LOC125503406 Neighboring gene uncharacterized LOC125503405 Neighboring gene uncharacterized LOC109536960 Neighboring gene uncharacterized LOC125503564 Neighboring gene transfer RNA serine (anticodon UGA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Quantitative metabolome, proteome and transcriptome analysis of midgut and fat body tissues in the mountain pine beetle, Dendroctonus ponderosae Hopkins, and insights into pheromone biosynthesis. Keeling CI, et al. Insect Biochem Mol Biol, 2016 Mar. PMID 26792242
  2. Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests. Keeling CI, et al. Insect Biochem Mol Biol, 2012 Aug. PMID 22516182
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor hamlet

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dendroctonus ponderosae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dpon_F_20191213v2

Genomic

  1. NW_026018165.1 Reference Dpon_F_20191213v2

    Range
    2499184..2580650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019903415.2 → XP_019758974.1  transcription factor hamlet isoform X1

    Related
    XP_019758974.1
    Conserved Domains (4) summary
    sd00017
    Location:739 → 759
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:737 → 759
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:751 → 775
    zf-H2C2_2; Zinc-finger double domain
    cl26464
    Location:535 → 666
    Atrophin-1; Atrophin-1 family

  2. XM_048663695.1 → XP_048519652.1  transcription factor hamlet isoform X3

  3. XM_048663694.1 → XP_048519651.1  transcription factor hamlet isoform X2

  4. XM_048663696.1 → XP_048519653.1  transcription factor hamlet isoform X4

  5. XM_048663697.1 → XP_048519654.1  transcription factor hamlet isoform X5

Nucleotide Protein
Heading Accession and Version

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