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LOC109535817 uncharacterized LOC109535817 [ Dendroctonus ponderosae (mountain pine beetle) ]

Gene ID: 109535817, updated on 30-Nov-2023

Summary

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Gene symbol
LOC109535817
Gene description
uncharacterized LOC109535817
Locus tag
HUJ05_000810
See related
EnsemblRapid:LOC109535817
Gene type
protein coding
RefSeq status
MODEL
Organism
Dendroctonus ponderosae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Scolytinae; Dendroctonus
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Genomic context

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See LOC109535817 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Dpon_F_20191213v2 (GCF_020466585.1) Unplaced Scaffold NW_026017110.1 (12453283..12463400)
100 previous assembly DendPond_male_1.0 (GCF_000355655.1) Unplaced Scaffold NW_017851939.1 (68268..80161)

NW_026017110.1Genomic Context describing neighboring genes Neighboring gene cell wall integrity and stress response component 1 Neighboring gene uncharacterized LOC109535808 Neighboring gene uncharacterized LOC109535818 Neighboring gene polygalacturonase Neighboring gene uncharacterized LOC125505840 Neighboring gene protein croquemort

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional genomics of mountain pine beetle (Dendroctonus ponderosae) midguts and fat bodies. Aw T, et al. BMC Genomics, 2010 Mar 30. PMID 20353591, Free PMC Article
  2. Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests. Keeling CI, et al. Insect Biochem Mol Biol, 2012 Aug. PMID 22516182
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC109535817

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dendroctonus ponderosae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dpon_F_20191213v2

Genomic

  1. NW_026017110.1 Reference Dpon_F_20191213v2

    Range
    12453283..12463400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048660815.1 → XP_048516772.1  uncharacterized protein LOC109535817

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases