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tln1 talin 1 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109530492, updated on 14-Mar-2024

Summary

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Gene symbol
tln1
Gene description
talin 1
See related
Ensembl:ENSHCOG00000014489
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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See tln1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
58
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017804997.1 (402506..497005, complement)

NW_017804997.1Genomic Context describing neighboring genes Neighboring gene interleukin 6 cytokine family signal transduce Neighboring gene tropomyosin 2 (beta) Neighboring gene uncharacterized LOC109530544 Neighboring gene YTH domain-containing protein 2-like Neighboring gene 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017804997.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in platelet aggregation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ruffle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
talin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017804997.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    402506..497005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019894296.1 → XP_019749855.1  talin-1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2Y1Z8
    Conserved Domains (7) summary
    cd12150
    Location:1674 → 1829
    talin-RS; rod-segment of the talin C-terminal domain
    smart00295
    Location:88 → 313
    B41; Band 4.1 homologues
    smart00307
    Location:2355 → 2550
    ILWEQ; I/LWEQ domain
    cd10569
    Location:309 → 400
    FERM_C_Talin; FERM domain C-lobe/F3 of Talin
    pfam08913
    Location:1868 → 1992
    VBS; Vinculin Binding Site
    pfam09141
    Location:491 → 652
    Talin_middle; Talin, middle domain
    pfam16511
    Location:4 → 83
    FERM_f0; N-terminal or F0 domain of Talin-head FERM

  2. XM_019894306.1 → XP_019749865.1  talin-1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2YE07
    Related
    ENSHCOP00000011501.1, ENSHCOT00000026616.1
    Conserved Domains (7) summary
    cd12150
    Location:1653 → 1808
    talin-RS; rod-segment of the talin C-terminal domain
    smart00295
    Location:88 → 313
    B41; Band 4.1 homologues
    smart00307
    Location:2334 → 2529
    ILWEQ; I/LWEQ domain
    cd10569
    Location:309 → 400
    FERM_C_Talin; FERM domain C-lobe/F3 of Talin
    pfam08913
    Location:1847 → 1971
    VBS; Vinculin Binding Site
    pfam09141
    Location:491 → 652
    Talin_middle; Talin, middle domain
    pfam16511
    Location:4 → 83
    FERM_f0; N-terminal or F0 domain of Talin-head FERM

  3. XM_019894288.1 → XP_019749847.1  talin-1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2Y1Z8
    Related
    ENSHCOP00000011513.1, ENSHCOT00000018250.1
    Conserved Domains (7) summary
    cd12150
    Location:1674 → 1829
    talin-RS; rod-segment of the talin C-terminal domain
    smart00295
    Location:88 → 313
    B41; Band 4.1 homologues
    smart00307
    Location:2355 → 2550
    ILWEQ; I/LWEQ domain
    cd10569
    Location:309 → 400
    FERM_C_Talin; FERM domain C-lobe/F3 of Talin
    pfam08913
    Location:1868 → 1992
    VBS; Vinculin Binding Site
    pfam09141
    Location:491 → 652
    Talin_middle; Talin, middle domain
    pfam16511
    Location:4 → 83
    FERM_f0; N-terminal or F0 domain of Talin-head FERM
Nucleotide Protein
Heading Accession and Version

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