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LOC109529658 plectin-like [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109529658, updated on 9-Nov-2023

Summary

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Gene symbol
LOC109529658
Gene description
plectin-like
See related
Ensembl:ENSHCOG00000010576
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
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Genomic context

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Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017806059.1 (719705..788314)

NW_017806059.1Genomic Context describing neighboring genes Neighboring gene hepcidin-like Neighboring gene hepcidin-like Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52 member 3-2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017806059.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017806059.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    719705..788314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019893035.1 → XP_019748594.1  plectin-like isoform X3

    Conserved Domains (7) summary
    smart00250
    Location:5006 → 5037
    PLEC; Plectin repeat
    COG5069
    Location:1065 → 1292
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1646 → 1835
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:5044 → 5083
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    cl02488
    Location:2146 → 2320
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl26511
    Location:2303 → 3101
    Neuromodulin_N; Gap junction protein N-terminal region

  2. XM_019893032.1 → XP_019748591.1  plectin-like isoform X1

    UniProtKB/TrEMBL
    A0A3Q2XTL4
    Conserved Domains (6) summary
    smart00250
    Location:3883 → 3914
    PLEC; Plectin repeat
    COG5069
    Location:1 → 169
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:523 → 712
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3921 → 3960
    Plectin; Plectin repeat
    cl02488
    Location:1023 → 1197
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl26511
    Location:1180 → 1978
    Neuromodulin_N; Gap junction protein N-terminal region

  3. XM_019893034.1 → XP_019748593.1  plectin-like isoform X2

    UniProtKB/TrEMBL
    A0A3Q2XTL4
    Related
    ENSHCOP00000008288.1, ENSHCOT00000000545.1
    Conserved Domains (6) summary
    smart00250
    Location:3879 → 3910
    PLEC; Plectin repeat
    COG5069
    Location:1 → 165
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:519 → 708
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3917 → 3956
    Plectin; Plectin repeat
    cl02488
    Location:1019 → 1193
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl26511
    Location:1176 → 1974
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein
Heading Accession and Version

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