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kirrel1b kirre like nephrin family adhesion molecule 1b [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109529544, updated on 14-Mar-2024

Summary

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Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
See related
Ensembl:ENSHCOG00000012580
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017806034.1 (553531..620674)

NW_017806034.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene cell adhesion molecule 3 Neighboring gene uncharacterized LOC109529547 Neighboring gene kelch-like protein 10 Neighboring gene kelch-like protein 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017806034.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017806034.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    553531..620674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019892963.1 → XP_019748522.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2XY52
    Conserved Domains (6) summary
    cd05898
    Location:390 → 493
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:26 → 115
    IG_like; Immunoglobulin like
    pfam13927
    Location:307 → 372
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 218
    Ig; Immunoglobulin domain
    cl28271
    Location:656 → 799
    dnaA; chromosomal replication initiation protein; Provisional
    cl28434
    Location:222 → 303
    I-set; Immunoglobulin I-set domain

  2. XM_019892965.1 → XP_019748524.1  kin of IRRE-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2XY52
    Conserved Domains (6) summary
    cd05898
    Location:390 → 493
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:26 → 115
    IG_like; Immunoglobulin like
    pfam13927
    Location:307 → 372
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 218
    Ig; Immunoglobulin domain
    cl28271
    Location:644 → 787
    dnaA; chromosomal replication initiation protein; Provisional
    cl28434
    Location:222 → 303
    I-set; Immunoglobulin I-set domain

  3. XM_019892964.1 → XP_019748523.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2XY52
    Related
    ENSHCOP00000010018.1, ENSHCOT00000016303.1
    Conserved Domains (6) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:25 → 114
    IG_like; Immunoglobulin like
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cl11960
    Location:136 → 217
    Ig; Immunoglobulin domain
    cl28271
    Location:655 → 798
    dnaA; chromosomal replication initiation protein; Provisional
    cl28434
    Location:221 → 302
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
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