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rrp8 ribosomal RNA processing 8 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109527219, updated on 14-Mar-2024

Summary

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Gene symbol
rrp8
Gene description
ribosomal RNA processing 8
See related
Ensembl:ENSHCOG00000001293
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805880.1 (2574..6794, complement)

NW_017805880.1Genomic Context describing neighboring genes Neighboring gene integrin-linked kinase Neighboring gene amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) Neighboring gene uncharacterized LOC109527222

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805880.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to glucose starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rDNA heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by glucose IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin silencing complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of rDNA heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosomal RNA-processing protein 8
Names
ribosomal RNA processing 8, methyltransferase, homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805880.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    2574..6794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019889011.1 → XP_019744570.1  ribosomal RNA-processing protein 8

    UniProtKB/TrEMBL
    A0A3Q3D1Z0
    Related
    ENSHCOP00000000469.1, ENSHCOT00000013724.1
    Conserved Domains (1) summary
    cl17173
    Location:309 → 515
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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