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galnt11 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109526304, updated on 14-Mar-2024

Summary

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Gene symbol
galnt11
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)
See related
Ensembl:ENSHCOG00000008667
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805831.1 (24352..28570, complement)

NW_017805831.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109526299 Neighboring gene zinc finger protein 708-like Neighboring gene chondrolectin Neighboring gene histone-lysine N-methyltransferase 2C-like Neighboring gene synaptonemal complex protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805831.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Notch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805831.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    24352..28570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019887497.1 → XP_019743056.1  polypeptide N-acetylgalactosaminyltransferase 11 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2XQ15
    Conserved Domains (2) summary
    cd02510
    Location:126 → 424
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:451 → 572
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_019887496.1 → XP_019743055.1  polypeptide N-acetylgalactosaminyltransferase 11 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2XQ15
    Related
    ENSHCOP00000006805.1, ENSHCOT00000003069.1
    Conserved Domains (2) summary
    cd02510
    Location:126 → 424
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:451 → 572
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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