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galnt18b UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109526015, updated on 14-Mar-2024

Summary

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Gene symbol
galnt18b
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b
See related
Ensembl:ENSHCOG00000002567
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Also known as
galnt18
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805824.1 (2191924..2254487)

NW_017805824.1Genomic Context describing neighboring genes Neighboring gene BTB (POZ) domain containing 10b Neighboring gene uncharacterized LOC109525815 Neighboring gene eukaryotic translation initiation factor 4 gamma 2 Neighboring gene CTR9 homolog, Paf1/RNA polymerase II complex component

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805824.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805824.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    2191924..2254487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019887009.1 → XP_019742568.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X2

    Conserved Domains (2) summary
    cd02510
    Location:161 → 461
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:474 → 601
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  2. XM_019887008.1 → XP_019742567.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2YJ66
    Related
    ENSHCOP00000018191.1, ENSHCOT00000011868.1
    Conserved Domains (2) summary
    cd02510
    Location:161 → 462
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:475 → 602
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  3. XM_019887010.1 → XP_019742569.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X3

    Conserved Domains (2) summary
    cd02510
    Location:85 → 386
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:399 → 526
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
Heading Accession and Version

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