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c1galt1c1 C1GALT1-specific chaperone 1 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109518784, updated on 14-Mar-2024

Summary

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Gene symbol
c1galt1c1
Gene description
C1GALT1-specific chaperone 1
See related
Ensembl:ENSHCOG00000015093
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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See c1galt1c1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805461.1 (1593057..1604003)

NW_017805461.1Genomic Context describing neighboring genes Neighboring gene protein eva-1 homolog C-like Neighboring gene chloride intracellular channel 2 Neighboring gene MCTS1 re-initiation and release factor Neighboring gene cullin 4B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805461.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C1GALT1-specific chaperone 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805461.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    1593057..1604003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019874845.1 → XP_019730404.1  C1GALT1-specific chaperone 1 isoform X1

    Conserved Domains (1) summary
    cl21608
    Location:152 → 248
    Galactosyl_T; Galactosyltransferase

  2. XM_019874847.1 → XP_019730406.1  C1GALT1-specific chaperone 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2Y3L4
    Related
    ENSHCOP00000012124.1, ENSHCOT00000019064.1
    Conserved Domains (1) summary
    cl21608
    Location:136 → 232
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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