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nkrf NFKB repressing factor [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109518701, updated on 14-Mar-2024

Summary

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Gene symbol
nkrf
Gene description
NFKB repressing factor
See related
Ensembl:ENSHCOG00000017066
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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See nkrf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805461.1 (150012..155753, complement)

NW_017805461.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109518712 Neighboring gene E74-like ETS transcription factor 1 Neighboring gene ubiquitin conjugating enzyme E2 A Neighboring gene septin 6 Neighboring gene PTTG1 regulator of sister chromatid separation, securin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805461.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NF-kappa-B-repressing factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805461.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    150012..155753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019874713.1 → XP_019730272.1  NF-kappa-B-repressing factor isoform X1

    UniProtKB/TrEMBL
    A0A3Q2Z3H8
    Related
    ENSHCOP00000026280.1, ENSHCOT00000021285.1
    Conserved Domains (3) summary
    cd02640
    Location:674 → 733
    R3H_NRF; R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the ...
    smart00358
    Location:521 → 581
    DSRM; Double-stranded RNA binding motif
    cl02611
    Location:619 → 662
    G-patch; G-patch domain

  2. XM_019874714.1 → XP_019730273.1  NF-kappa-B-repressing factor isoform X2

    Conserved Domains (3) summary
    cd02640
    Location:674 → 733
    R3H_NRF; R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the ...
    smart00358
    Location:521 → 581
    DSRM; Double-stranded RNA binding motif
    cl02611
    Location:619 → 662
    G-patch; G-patch domain

  3. XM_019874715.1 → XP_019730274.1  NF-kappa-B-repressing factor isoform X3

    Conserved Domains (3) summary
    cd02640
    Location:640 → 699
    R3H_NRF; R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the ...
    smart00358
    Location:487 → 547
    DSRM; Double-stranded RNA binding motif
    cl02611
    Location:585 → 628
    G-patch; G-patch domain

RNA

  1. XR_002168811.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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