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galnt1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109515458, updated on 14-Mar-2024

Summary

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Gene symbol
galnt1
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
See related
Ensembl:ENSHCOG00000016675
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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See galnt1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805224.1 (136771..174105)

NW_017805224.1Genomic Context describing neighboring genes Neighboring gene scratch family transcriptional repressor 1 Neighboring gene INO80 complex subunit C Neighboring gene transmembrane protein 245 Neighboring gene uncharacterized LOC109515459 Neighboring gene ferric chelate reductase 1 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805224.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805224.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    136771..174105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019869254.1 → XP_019724813.1  polypeptide N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A3Q2Y707, A0A3Q2ZI66
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_019869252.1 → XP_019724811.1  polypeptide N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A3Q2Y707, A0A3Q2ZI66
    Related
    ENSHCOP00000026073.1, ENSHCOT00000020829.1
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_019869253.1 → XP_019724812.1  polypeptide N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A3Q2Y707, A0A3Q2ZI66
    Related
    ENSHCOP00000013474.1, ENSHCOT00000027329.1
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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