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unm_hu7910 un-named hu7910 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109515224, updated on 14-Mar-2024

Summary

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Gene symbol
unm_hu7910
Gene description
un-named hu7910
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Also known as
asph
Orthologs
zebrafish all
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Genomic context

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See unm_hu7910 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805210.1 (33310..51832)

NW_017805210.1Genomic Context describing neighboring genes Neighboring gene sodium channel protein type 5 subunit alpha-like Neighboring gene vicilin-like seed storage protein At2g18540 Neighboring gene uncharacterized LOC109515233 Neighboring gene clavesin 1 Neighboring gene RIO kinase 3 (yeast) Neighboring gene TBC1 domain family, member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805210.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase
Names
aspartate beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805210.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    33310..51832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019868879.1 → XP_019724438.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

    Conserved Domains (4) summary
    pfam05279
    Location:38 → 298
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:432 → 638
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:512 → 538
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:681 → 834
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_019868871.1 → XP_019724430.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Conserved Domains (4) summary
    pfam05279
    Location:100 → 360
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:494 → 700
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:574 → 600
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:743 → 896
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_019868877.1 → XP_019724436.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

    Conserved Domains (4) summary
    pfam05279
    Location:100 → 360
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:451 → 657
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:531 → 557
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:700 → 853
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  4. XM_019868872.1 → XP_019724431.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Conserved Domains (5) summary
    pfam05279
    Location:100 → 348
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:482 → 688
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:562 → 588
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:731 → 884
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    cl26557
    Location:277 → 444
    RNase_E_G; Ribonuclease E/G family

  5. XM_019868876.1 → XP_019724435.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

    Conserved Domains (4) summary
    pfam05279
    Location:100 → 340
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:462 → 668
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:542 → 568
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:711 → 864
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  6. XM_019868875.1 → XP_019724434.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    Conserved Domains (5) summary
    pfam05279
    Location:100 → 340
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:462 → 668
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:542 → 568
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:711 → 864
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    cl26557
    Location:295 → 516
    RNase_E_G; Ribonuclease E/G family

  7. XM_019868873.1 → XP_019724432.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Conserved Domains (5) summary
    pfam05279
    Location:100 → 345
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:479 → 685
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:559 → 585
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:728 → 881
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    cl28246
    Location:244 → 449
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  8. XM_019868874.1 → XP_019724433.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Conserved Domains (4) summary
    pfam05279
    Location:82 → 342
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:476 → 682
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:556 → 582
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:725 → 878
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
Heading Accession and Version

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