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r3hdm1 R3H domain containing 1 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109514972, updated on 12-Sep-2024

Summary

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Gene symbol
r3hdm1
Gene description
R3H domain containing 1
See related
Ensembl:ENSHCOG00000013366
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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See r3hdm1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805153.1 (1593818..1648967)

NW_017805153.1Genomic Context describing neighboring genes Neighboring gene cyclin-T2-like Neighboring gene zinc finger, RAN-binding domain containing 3 Neighboring gene uncharacterized LOC109514975 Neighboring gene uncharacterized LOC109514974 Neighboring gene uncharacterized LOC109514976 Neighboring gene Rho family GTPase 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805153.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
R3H domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805153.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    1593818..1648967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019868455.1 → XP_019724014.1  R3H domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:152 → 213
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:581 → 882
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:236 → 286
    SUZ; SUZ domain

  2. XM_019868453.1 → XP_019724012.1  R3H domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:152 → 213
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:581 → 882
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:236 → 286
    SUZ; SUZ domain

  3. XM_019868461.1 → XP_019724020.1  R3H domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:152 → 213
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:581 → 882
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:236 → 286
    SUZ; SUZ domain

  4. XM_019868464.1 → XP_019724023.1  R3H domain-containing protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:152 → 213
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:581 → 882
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:236 → 286
    SUZ; SUZ domain

  5. XM_019868468.1 → XP_019724027.1  R3H domain-containing protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:152 → 213
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:581 → 882
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:236 → 286
    SUZ; SUZ domain

  6. XM_019868462.1 → XP_019724021.1  R3H domain-containing protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:152 → 213
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:581 → 882
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:236 → 286
    SUZ; SUZ domain

  7. XM_019868463.1 → XP_019724022.1  R3H domain-containing protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:152 → 213
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:581 → 882
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:236 → 286
    SUZ; SUZ domain

  8. XM_019868460.1 → XP_019724019.1  R3H domain-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A3Q2Z0T5
    Conserved Domains (3) summary
    cd02642
    Location:152 → 213
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:544 → 845
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:236 → 286
    SUZ; SUZ domain

  9. XM_019868466.1 → XP_019724025.1  R3H domain-containing protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:152 → 213
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:581 → 882
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:236 → 286
    SUZ; SUZ domain

  10. XM_019868467.1 → XP_019724026.1  R3H domain-containing protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:152 → 213
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:581 → 882
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:236 → 286
    SUZ; SUZ domain

  11. XM_019868452.1 → XP_019724011.1  R3H domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:152 → 213
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:581 → 882
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:236 → 286
    SUZ; SUZ domain

  12. XM_019868457.1 → XP_019724016.1  R3H domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:146 → 207
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:575 → 876
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:230 → 280
    SUZ; SUZ domain

  13. XM_019868456.1 → XP_019724015.1  R3H domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:152 → 213
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:581 → 882
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:236 → 286
    SUZ; SUZ domain

  14. XM_019868458.1 → XP_019724017.1  R3H domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Conserved Domains (3) summary
    cd02642
    Location:122 → 183
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:551 → 852
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:206 → 256
    SUZ; SUZ domain

  15. XM_019868459.1 → XP_019724018.1  R3H domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q2Y039
    Related
    ENSHCOP00000010685.1, ENSHCOT00000026284.1
    Conserved Domains (3) summary
    cd02642
    Location:116 → 177
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:545 → 846
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:200 → 250
    SUZ; SUZ domain
Nucleotide Protein
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