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chst11 carbohydrate (chondroitin 4) sulfotransferase 11 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109513626, updated on 14-Mar-2024

Summary

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Gene symbol
chst11
Gene description
carbohydrate (chondroitin 4) sulfotransferase 11
See related
Ensembl:ENSHCOG00000010377
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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See chst11 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805122.1 (574099..622616, complement)

NW_017805122.1Genomic Context describing neighboring genes Neighboring gene twist family bHLH transcription factor 1a Neighboring gene sorting nexin 13 Neighboring gene nuclear transcription factor Y subunit beta Neighboring gene podocalyxin-like Neighboring gene muskelin 1, intracellular mediator containing kelch motifs

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805122.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805122.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    574099..622616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019866194.1 → XP_019721753.1  carbohydrate sulfotransferase 11 isoform X2

    Conserved Domains (1) summary
    pfam03567
    Location:73 → 303
    Sulfotransfer_2; Sulfotransferase family

  2. XM_019866193.1 → XP_019721752.1  carbohydrate sulfotransferase 11 isoform X2

    Conserved Domains (1) summary
    pfam03567
    Location:73 → 303
    Sulfotransfer_2; Sulfotransferase family

  3. XM_019866192.1 → XP_019721751.1  carbohydrate sulfotransferase 11 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2YWP9
    Related
    ENSHCOP00000022564.1, ENSHCOT00000000744.1
    Conserved Domains (1) summary
    pfam03567
    Location:113 → 343
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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