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sgca sarcoglycan, alpha [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109513277, updated on 14-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
Ensembl:ENSHCOG00000018700
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805118.1 (896174..908277, complement)

NW_017805118.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109513289 Neighboring gene collagen, type I, alpha 1b Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene uncharacterized LOC109513280 Neighboring gene PR domain containing 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805118.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805118.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    896174..908277 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019865600.1 → XP_019721159.1  alpha-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A3Q2Z8C3
    Related
    ENSHCOP00000027135.1, ENSHCOT00000022984.1
    Conserved Domains (1) summary
    pfam05510
    Location:9 → 372
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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